Najmanovich, Rafaël: search on Z-Library

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1

A curatedC. difficilestrain 630 metabolic network: prediction of essential targets and inhibitors

Larocque, Mathieu, Chénard, Thierry, Najmanovich, Rafael

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

2

Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence

Isami, Shuhei, Sakamoto, Naoaki, Nishimori, Hiraku, Awazu, Akinori, Najmanovich, Rafael J.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.54 MB

english, 2015

3

Kinetics of Bulge Bases in Small RNAs and the Effect of Pressure on It

Kumar, Pradeep, Lehmann, Jean, Libchaber, Albert, Najmanovich, Rafael Josef

Journal:

Year:

2012

Language:

english

File:

PDF, 811 KB

english, 2012

4

Predicting Helical Topologies in RNA Junctions as Tree Graphs

Laing, Christian, Jung, Segun, Kim, Namhee, Elmetwaly, Shereef, Zahran, Mai, Schlick, Tamar, Najmanovich, Rafael Josef

Journal:

Year:

2013

Language:

english

File:

PDF, 2.87 MB

english, 2013

5

Structural Analysis of Metal Sites in Proteins: Non-heme Iron Sites as a Case Study

Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Rafael J. Najmanovich, Janet M. Thornton

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 6.00 MB

english, 2009

6

Structural Chemistry of the Histone Methyltransferases Cofactor Binding Site

Campagna-Slater, Valérie, Mok, Man Wai, Nguyen, Kong T., Feher, Miklos, Najmanovich, Rafael, Schapira, Matthieu

Journal:

Journal of Chemical Information and Modeling

Year:

2011

Language:

english

File:

PDF, 5.04 MB

english, 2011

7

Analysis of Subpocket Selectivity and Identification of Potent Selective Inhibitors for Matriptase and Matriptase-2

Duchêne, Dominic, Colombo, Eloïc, Désilets, Antoine, Boudreault, Pierre-Luc, Leduc, Richard, Marsault, Eric, Najmanovich, Rafael

Journal:

Journal of Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

8

Structure of the Human Protein Kinase MPSK1 Reveals an Atypical Activation Loop Architecture

Jeyanthy Eswaran, Antonio Bernad, Jose M. Ligos, Barbara Guinea, Judit É. Debreczeni, Frank Sobott, Sirlester A. Parker, Rafael Najmanovich, Benjamin E. Turk, Stefan Knapp

Journal:

Year:

2008

Language:

english

File:

PDF, 1.37 MB

english, 2008

9

Altruism Can Proliferate through Population Viscosity despite High Random Gene Flow

Schonmann, Roberto H., Vicente, Renato, Caticha, Nestor, Najmanovich, Rafael Josef

Journal:

Year:

2013

Language:

english

File:

PDF, 366 KB

english, 2013

10

The collapse transition in the HP model

Rafael J. Najmanovich, Jorge L. deLyra, Vera B. Henriques

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1998

Language:

english

File:

PDF, 116 KB

english, 1998

11

Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes

Chénard, Thierry, Guénard, Frédéric, Vohl, Marie-Claude, Carpentier, André, Tchernof, André, Najmanovich, Rafael J.

Journal:

BMC Systems Biology

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

12

Roles for Ordered and Bulk Solvent in Ligand Recognition and Docking in Two Related Cavities

Barelier, Sarah, Boyce, Sarah E., Fish, Inbar, Fischer, Marcus, Goodin, David B., Shoichet, Brian K., Najmanovich, Rafael Josef

Journal:

Year:

2013

Language:

english

File:

PDF, 2.81 MB

english, 2013

13

Protein side-chain rearrangement in regions of point mutations

Eran Eyal, Rafael Najmanovich, Marvin Edelman, Vladimir Sobolev

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 267 KB

english, 2003

14

Vibrational entropy differences between mesophile and thermophile proteins and their use in protein engineering

Frappier, Vincent, Najmanovich, Rafael

Journal:

Protein Science

Year:

2015

Language:

english

File:

PDF, 981 KB

english, 2015

15

Toll-like receptor stimulation differentially regulates vasoactive intestinal peptide type 2 receptor in macrophages

Juan Luis Herrera, Elena Gonzalez-Rey, Rafael Fernandez-Montesinos, Francisco J. Quintana, Rafael Najmanovich, David Pozo

Journal:

Journal of Cellular and Molecular Medicine

Year:

2009

Language:

english

File:

PDF, 722 KB

english, 2009

16

The Mode of Action of Recombinant Mycobacterium tuberculosis Shikimate Kinase: Kinetics and Thermodynamics Analyses

Rosado, Leonardo Astolfi, Vasconcelos, Igor Bordin, Palma, Mário Sérgio, Frappier, Vincent, Najmanovich, Rafael Josef, Santos, Diógenes Santiago, Basso, Luiz Augusto, Agarwal, Pratul K.

Journal:

Year:

2013

Language:

english

File:

PDF, 522 KB

english, 2013

17

Functional diversity of TMPRSS6 isoforms and variants expressed in hepatocellular carcinoma cell lines

Dion, Sébastien P., Béliveau, François, Morency, Louis-Philippe, Désilets, Antoine, Najmanovich, Rafaël, Leduc, Richard

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

18

Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins

Eran Eyal, Rafael Najmanovich, Brendan J. Mcconkey, Marvin Edelman, Vladimir Sobolev

Journal:

Journal of Computational Chemistry

Year:

2004

Language:

english

File:

PDF, 237 KB

english, 2004

19

NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID

Gaudreault, Francis, Morency, Louis-Philippe, Najmanovich, Rafael J.

Journal:

Year:

2015

Language:

english

File:

PDF, 150 KB

english, 2015

20

Design and Synthesis of Potent, Selective Inhibitors of Matriptase

Colombo, Éloïc, Désilets, Antoine, Duchêne, Dominic, Chagnon, Félix, Najmanovich, Rafael, Leduc, Richard, Marsault, Eric

Journal:

ACS Medicinal Chemistry Letters

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

21

Deep-Sequencing of the Peach Latent Mosaic Viroid Reveals New Aspects of Population Heterogeneity

Glouzon, Jean-Pierre Sehi, Bolduc, François, Wang, Shengrui, Najmanovich, Rafael J., Perreault, Jean-Pierre, Khudyakov, Yury E.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.23 MB

english, 2014

22

Side-chain flexibility in proteins upon ligand binding

Rafael Najmanovich, Josef Kuttner, Vladimir Sobolev, Marvin Edelman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 122 KB

english, 2000

23

Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?

Michele Vendruscolo, Rafael Najmanovich, Eytan Domany

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 253 KB

english, 2000

24

FlexAID: Revisiting Docking on Non-Native-Complex Structures

Gaudreault, Francis, Najmanovich, Rafael J.

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015

25

ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability

Frappier, Vincent, Chartier, Matthieu, Najmanovich, Rafael J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

26

PPARγ Regulates Expression of Carbohydrate Sulfotransferase 11 (CHST11/C4ST1), a Regulator of LPL Cell Surface Binding

Tasdelen, Ismayil, Berger, Ruud, Kalkhoven, Eric, Najmanovich, Rafael Josef

Journal:

Year:

2013

Language:

english

File:

PDF, 2.15 MB

english, 2013

27

Identification of a Small Molecule That Selectively Inhibits Mouse PC2 over Mouse PC1/3: A Computational and Experimental Study

Yongye, Austin B., Vivoli, Mirella, Lindberg, Iris, Appel, Jon R., Houghten, Richard A., Martinez-Mayorga, Karina, Najmanovich, Rafael Josef

Journal:

Year:

2013

Language:

english

File:

PDF, 639 KB

english, 2013

28

IsoMIF Finder: online detection of binding site molecular interaction field similarities

Chartier, Matthieu, Adriansen, Etienne, Najmanovich, Rafael

Journal:

Year:

2016

Language:

english

File:

PDF, 132 KB

english, 2016

29

A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations

Frappier, Vincent, Najmanovich, Rafael J., MacKerell, Alexander Donald

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 3.00 MB

english, 2014

30

Modulating the selectivity of matriptase-2 inhibitors with unnatural amino acids

St-Georges, Catherine, Désilets, Antoine, Béliveau, François, Ghinet, Mariana, Dion, Sébastien P., Colombo, Éloic, Boudreault, Pierre-Luc, Najmanovich, Rafael J., Leduc, Richard, Marsault, Éric

Journal:

European Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 2.46 MB

english, 2017

31

A three-way inter-molecular network accounts for the Ca V α2δ1-induced functional modulation of the pore-forming Ca V 1.2 subunit

Briot, Julie, Mailhot, Olivier, Bourdin, Benoîte, Tétreault, Marie-Philippe, Najmanovich, Rafael, Parent, Lucie

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 1.12 MB

english, 2018

32

Functional diversity of TMPRSS6 isoforms and variants expressed in hepatocellular carcinoma cell lines

Dion, Sébastien P., Béliveau, François, Morency, Louis-Philippe, Désilets, Antoine, Najmanovich, Rafaël, Leduc, Richard

Journal:

Scientific Reports

Year:

2018

File:

PDF, 1.68 MB

2018

33

Detection of Binding Site Molecular Interaction Field Similarities

Chartier, Matthieu, Najmanovich, Rafael

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 4.28 MB

english, 2015

34

Possible Regulatory Roles of Promoter G-Quadruplexes in Cardiac Function-Related Genes – Human TnIc as a Model

Zhou, Wenhua, Suntharalingam, Kogularamanan, Brand, Nigel J., Barton, Paul J. R., Vilar, Ramon, Ying, Liming, Najmanovich, Rafael Josef

Journal:

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

35

Prediction of Protein Function from Structure: Insights from Methods for the Detection of Local Structural Similarities

Najmanovich, Rafael J., Torrance, James W., Thornton, Janet M.

Journal:

Year:

2005

File:

PDF, 166 KB

2005

36

A method for localizing ligand binding pockets in protein structures

Fabian Glaser, Richard J. Morris, Rafael J. Najmanovich, Roman A. Laskowski, Janet M. Thornton

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1019 KB

english, 2006

37

Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases

Allali-Hassani, Abdellah, Pan, Patricia W., Dombrovski, Ludmila, Najmanovich, Rafael, Tempel, Wolfram, Dong, Aiping, Loppnau, Peter, Martin, Fernando, Thonton, Janet, Edwards, Aled M., Bochkarev, Alex

Journal:

Year:

2007

Language:

english

File:

PDF, 1.36 MB

english, 2007

38

Evolutionary studies of ligand binding sites in proteins

Najmanovich, Rafael J

Journal:

Current Opinion in Structural Biology

Year:

2017

Language:

english

File:

PDF, 402 KB

english, 2017

39

Structural Analyses of a Constitutively Active Mutant of Exchange Protein Directly Activated by cAMP

White, Mark A., Li, Sheng, Tsalkova, Tamara, Mei, Fang C., Liu, Tong, Woods, Virgil L., Cheng, Xiaodong, Najmanovich, Rafael Josef

Journal:

Year:

2012

Language:

english

File:

PDF, 873 KB

english, 2012

40

Identification of an alternative translation initiation site in the sequence of the commonly used Glutathione S-Transferase tag

Bernier, Sarah C., Morency, Louis-Philippe, Najmanovich, Rafael, Salesse, Christian

Journal:

Journal of Biotechnology

Year:

2018

Language:

english

File:

PDF, 595 KB

english, 2018

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